Standardized phylogenetic and molecular evolutionary analysis applied to species across the microbial tree of life | Scientific Reports
Metagenomic species profiling using universal phylogenetic marker genes | Nature Methods
Phylomark, a Tool To Identify Conserved Phylogenetic Markers from Whole-Genome Alignments | Applied and Environmental Microbiology
A rooted phylogeny resolves early bacterial evolution | Science
List of some other molecular markers used in phylogeny research. | Download Table
Precise phylogenetic analysis of microbial isolates and genomes from metagenomes using PhyloPhlAn 3.0 | Nature Communications
Phylomark, a Tool To Identify Conserved Phylogenetic Markers from Whole-Genome Alignments | Applied and Environmental Microbiology
Systematic Identification of Gene Families for Use as “Markers” for Phylogenetic and Phylogeny-Driven Ecological Studies of Bacteria and Archaea and Their Major Subgroups | PLOS ONE
Life | Free Full-Text | PhyloM: A Computer Program for Phylogenetic Inference from Measurement or Binary Data, with Bootstrapping
Gene markers for exon capture and phylogenomics in ray‐finned fishes - Jiang - 2019 - Ecology and Evolution - Wiley Online Library
![Iroki: automatic customization and visualization of phylogenetic trees [PeerJ]](https://dfzljdn9uc3pi.cloudfront.net/2020/8584/1/fig-1-2x.jpg "Iroki: automatic customization and visualization of phylogenetic trees [PeerJ]")
Iroki: automatic customization and visualization of phylogenetic trees [PeerJ]
Characterization and phylogenetic analysis of the complete mitochondrial genome of the pathogenic fungus Ilyonectria destructans | Scientific Reports
Complementary combination of multiplex high‐throughput DNA sequencing for molecular phylogeny - Suyama - 2022 - Ecological Research - Wiley Online Library
Gene encoding the CTP synthetase as an appropriate molecular tool for identification and phylogenetic study of the family Bifidobacteriaceae - Killer - 2018 - MicrobiologyOpen - Wiley Online Library
Importance of Phylogeny in Microbiology
Frontiers | A Review of Bioinformatics Tools for Bio-Prospecting from Metagenomic Sequence Data
Molecular markers from the chloroplast genome of rose provide a complementary tool for variety discrimination and profiling | Scientific Reports
New tool helps find gene markers in microorganisms - DOE Joint Genome Institute
Metagenomics-Based Phylogeny and Phylogenomic | IntechOpen
SWPhylo – A Novel Tool for Phylogenomic Inferences by Comparison of Oligonucleotide Patterns and Integration of Genome-Based and Gene-Based Phylogenetic Trees - Xiaoyu Yu, Oleg N Reva, 2018
Frontiers | GET_PHYLOMARKERS, a Software Package to Select Optimal Orthologous Clusters for Phylogenomics and Inferring Pan-Genome Phylogenies, Used for a Critical Geno-Taxonomic Revision of the Genus Stenotrophomonas
